Answer:
The trenches were filled with mud
Explanation:
They wouldn't use "seas of mud" if the rain was cleaning the soldiers uniforms.
They didn't mean the sea was literally spilling into the trenches.
And the last one. "The rain ran through the trenches like the waves of the sea"
Its not the answer because it wasn't just the rain that made the trenches like the sea. It was the mud that caked the uniforms. So this would not be the right one.